Models::TwoMetaNb Struct Reference

#include <two_meta_nb.hpp>

Public Types
enum class	particle_var : int {   age = INDEX_FROM_ENUM(Uptakeparticle_var::COUNT) , length , nu1 , nu2 ,   l_cp , nu_eff_1 , nu_eff_2 , phi_pts ,   contrib_phi_s , contrib_phi_o2 , contrib_phi_ac , COUNT }
using	uniform_weight = std::true_type
using	Self = TwoMetaNb
using	FloatType = float
using	Config = std::nullopt_t
using	SelfParticle = MC::ParticlesModel<Self::n_var, Self::FloatType>

Static Public Member Functions
static MC::ContribIndexBounds	get_bounds ()
static KOKKOS_INLINE_FUNCTION double	mass (std::size_t idx, const SelfParticle &arr)
static std::vector< std::string_view >	names ()
static std::vector< std::size_t >	get_number ()
static KOKKOS_INLINE_FUNCTION void	preinit ()
static KOKKOS_INLINE_FUNCTION void	init (const MC::pool_type &random_pool, std::size_t idx, const SelfParticle &arr)
static KOKKOS_INLINE_FUNCTION MC::Status	update (const MC::pool_type &random_pool, FloatType d_t, std::size_t idx, const SelfParticle &arr, const MC::LocalConcentration &c)
static KOKKOS_INLINE_FUNCTION void	division (const MC::pool_type &random_pool, std::size_t idx, std::size_t idx2, const SelfParticle &arr, const SelfParticle &buffer_arr)
static KOKKOS_INLINE_FUNCTION void	contribution (std::size_t idx, std::size_t position, double weight, const SelfParticle &arr, const MC::ContributionView &contributions)

Public Attributes
MODEL_CONSTANT FloatType	MolarMassG
MODEL_CONSTANT FloatType	MolarMassO2
MODEL_CONSTANT FloatType	l_max_m = 5e-6
MODEL_CONSTANT FloatType	l_c_m = 3e-6
MODEL_CONSTANT FloatType	d_m = 0.3e-6
MODEL_CONSTANT FloatType	l_min_m = 0.9e-6
MODEL_CONSTANT FloatType	dl_max_ms
MODEL_CONSTANT FloatType	lin_density
MODEL_CONSTANT FloatType	y_sx_1
MODEL_CONSTANT FloatType	y_sx_2 = y_sx_1 / 3.
MODEL_CONSTANT FloatType	y_sa = 0.8
MODEL_CONSTANT FloatType	y_os_molar = 3
MODEL_CONSTANT FloatType	tau_1 = 1000.
MODEL_CONSTANT FloatType	tau_2 = 1000.
MODEL_CONSTANT FloatType	phi_max = (dl_max_ms * lin_density) * y_sx_1
MODEL_CONSTANT FloatType	phi_o2_max
MODEL_CONSTANT FloatType	nu_max_kg_s = dl_max_ms * lin_density
MODEL_CONSTANT FloatType	k_o
MODEL_CONSTANT FloatType	k = 1e-2
MODEL_CONSTANT FloatType	k_perm = 1e-3
MODEL_CONSTANT FloatType	beta = 7
MODEL_CONSTANT FloatType	tau_ap_1 = 300
MODEL_CONSTANT FloatType	tau_ap_2 = 200
MODEL_CONSTANT FloatType	tau_ap_3 = 1000
MODEL_CONSTANT auto	length_c_dist
MODEL_CONSTANT FloatType	adder_mean = 1.5e-6
MODEL_CONSTANT auto	adder_dist

Static Public Attributes
static constexpr std::size_t	n_var = INDEX_FROM_ENUM(particle_var::COUNT)
static constexpr std::string_view	name = "two_mode_nb"

Member Typedef Documentation

Config

using Models::TwoMetaNb::Config = std::nullopt_t

FloatType

using Models::TwoMetaNb::FloatType = float

Self

using Models::TwoMetaNb::Self = TwoMetaNb

SelfParticle

using Models::TwoMetaNb::SelfParticle = MC::ParticlesModel<Self::n_var, Self::FloatType>

uniform_weight

using Models::TwoMetaNb::uniform_weight = std::true_type

Member Enumeration Documentation

particle_var

enum class Models::TwoMetaNb::particle_var : int

strong

Enumerator
age
length
nu1
nu2
l_cp
nu_eff_1
nu_eff_2
phi_pts
contrib_phi_s
contrib_phi_o2
contrib_phi_ac
COUNT

Member Function Documentation

contribution()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaNb::contribution ( std::size_t idx, std::size_t position, double weight, const SelfParticle & arr, const MC::ContributionView & contributions )

static

division()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaNb::division ( const MC::pool_type & random_pool, std::size_t idx, std::size_t idx2, const SelfParticle & arr, const SelfParticle & buffer_arr )

static

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get_bounds()

MC::ContribIndexBounds Models::TwoMetaNb::get_bounds ( )

inlinestatic

get_number()

std::vector< std::size_t > Models::TwoMetaNb::get_number ( )

inlinestatic

init()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaNb::init ( const MC::pool_type & random_pool, std::size_t idx, const SelfParticle & arr )

static

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mass()

KOKKOS_INLINE_FUNCTION double Models::TwoMetaNb::mass ( std::size_t idx, const SelfParticle & arr )

inlinestatic

names()

std::vector< std::string_view > Models::TwoMetaNb::names ( )

inlinestatic

preinit()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaNb::preinit ( )

inlinestatic

update()

KOKKOS_INLINE_FUNCTION MC::Status Models::TwoMetaNb::update ( const MC::pool_type & random_pool, FloatType d_t, std::size_t idx, const SelfParticle & arr, const MC::LocalConcentration & c )

static

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Member Data Documentation

adder_dist

MODEL_CONSTANT auto Models::TwoMetaNb::adder_dist

Initial value:

=
        MC::Distributions::TruncatedNormal<FloatType>(
            adder_mean,
            adder_mean / 2.,
            adder_mean / 20.,
            adder_mean * 10)

adder_mean

MODEL_CONSTANT FloatType Models::TwoMetaNb::adder_mean = 1.5e-6

beta

MODEL_CONSTANT FloatType Models::TwoMetaNb::beta = 7

d_m

MODEL_CONSTANT FloatType Models::TwoMetaNb::d_m = 0.3e-6

dl_max_ms

MODEL_CONSTANT FloatType Models::TwoMetaNb::dl_max_ms

Initial value:

=
        10 * 2e-10

k

MODEL_CONSTANT FloatType Models::TwoMetaNb::k = 1e-2

k_o

MODEL_CONSTANT FloatType Models::TwoMetaNb::k_o

Initial value:

=
        0.0001

k_perm

MODEL_CONSTANT FloatType Models::TwoMetaNb::k_perm = 1e-3

l_c_m

MODEL_CONSTANT FloatType Models::TwoMetaNb::l_c_m = 3e-6

l_max_m

MODEL_CONSTANT FloatType Models::TwoMetaNb::l_max_m = 5e-6

l_min_m

MODEL_CONSTANT FloatType Models::TwoMetaNb::l_min_m = 0.9e-6

length_c_dist

MODEL_CONSTANT auto Models::TwoMetaNb::length_c_dist

Initial value:

=
        MC::Distributions::TruncatedNormal<FloatType>(
            l_c_m, l_c_m / 2., l_min_m, l_max_m)

lin_density

MODEL_CONSTANT FloatType Models::TwoMetaNb::lin_density

Initial value:

=
        c_linear_density(static_cast<FloatType>(1000), d_m)

MolarMassG

MODEL_CONSTANT FloatType Models::TwoMetaNb::MolarMassG

Initial value:

=
        Models::MolarMass::GramPerMole::glucose<FloatType>

MolarMassO2

MODEL_CONSTANT FloatType Models::TwoMetaNb::MolarMassO2

Initial value:

=
        Models::MolarMass::GramPerMole::dioxygen<FloatType>

n_var

std::size_t Models::TwoMetaNb::n_var = INDEX_FROM_ENUM(particle_var::COUNT)

staticconstexpr

name

std::string_view Models::TwoMetaNb::name = "two_mode_nb"

staticconstexpr

nu_max_kg_s

MODEL_CONSTANT FloatType Models::TwoMetaNb::nu_max_kg_s = dl_max_ms * lin_density

phi_max

MODEL_CONSTANT FloatType Models::TwoMetaNb::phi_max = (dl_max_ms * lin_density) * y_sx_1

phi_o2_max

MODEL_CONSTANT FloatType Models::TwoMetaNb::phi_o2_max

Initial value:

=
        10 * phi_max / MolarMassG * y_os_molar * MolarMassO2

tau_1

MODEL_CONSTANT FloatType Models::TwoMetaNb::tau_1 = 1000.

tau_2

MODEL_CONSTANT FloatType Models::TwoMetaNb::tau_2 = 1000.

tau_ap_1

MODEL_CONSTANT FloatType Models::TwoMetaNb::tau_ap_1 = 300

tau_ap_2

MODEL_CONSTANT FloatType Models::TwoMetaNb::tau_ap_2 = 200

tau_ap_3

MODEL_CONSTANT FloatType Models::TwoMetaNb::tau_ap_3 = 1000

y_os_molar

MODEL_CONSTANT FloatType Models::TwoMetaNb::y_os_molar = 3

y_sa

MODEL_CONSTANT FloatType Models::TwoMetaNb::y_sa = 0.8

y_sx_1

MODEL_CONSTANT FloatType Models::TwoMetaNb::y_sx_1

Initial value:

=
        1. / 2.217737e+00

y_sx_2

MODEL_CONSTANT FloatType Models::TwoMetaNb::y_sx_2 = y_sx_1 / 3.

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The documentation for this struct was generated from the following file:

• apps/libs/models/public/models/two_meta_nb.hpp