Models Namespace Reference

Models definition. More...

Namespaces
namespace	GammaDivision
namespace	MolarMass
namespace	Stoichiometry
	Compile time elemental closure of the reactions of Models::Acetate.

Classes
struct	Acetate
	Acetate model with explicit oxygen limitation. More...
struct	FixedLength
struct	Monod
	Simplified Monod model for glucose consumption and biomass growth. More...
struct	SimpleAcetate
struct	SimpleModel
	Rod-shaped cell growing on glucose, dividing on a timer. More...
struct	UdfModel
struct	Uptake
struct	UptakeDefault

Concepts
concept	UptakeModel

Functions
template<typename Model> requires (std::is_constructible_v<AutoGenerated::ContainerVariant, MC::ParticlesContainer<Model>> && ConfigurableModel<Model>)
Model::Config	get_model_configuration (const ExecInfo &info, std::size_t n)
template<typename Model> requires (std::is_constructible_v<AutoGenerated::ContainerVariant, MC::ParticlesContainer<Model>> && NonConfigurableModel<Model>)
Model::Config	get_model_configuration (const ExecInfo &info, std::size_t n)
template<FloatingPointType F>
KOKKOS_INLINE_FUNCTION constexpr F	f_saturation (const F x, const F k) noexcept
template<typename T>
KOKKOS_INLINE_FUNCTION T	get_clamped_concentration_cast (const MC::LocalConcentration &c, const std::size_t position_index, const std::size_t species_index)
template<FloatingPointType F>
static F constexpr	_get_phi_s_max (F density, F dl, F glucose_to_biomass_yield=0.5)
template<FloatingPointType T>
KOKKOS_INLINE_FUNCTION Kokkos::pair< T, T >	g_partition (T a, T p)
template<FloatingPointType T>
KOKKOS_INLINE_FUNCTION MC::Status	check_div (const T l, const T lc)
template<FloatingPointType F>
KOKKOS_INLINE_FUNCTION consteval F	c_linear_density (F rho, F d)
KOKKOS_INLINE_FUNCTION bool	check_probability_division (double d_t, double gamma, MC::pool_type random_pool)
KOKKOS_INLINE_FUNCTION bool	almost_equal (double val, double val2, double tolerance=1e-8)
KOKKOS_INLINE_FUNCTION constexpr bool	almost_zero (double x, double tol=1e-8)
template<typename... Args>
KOKKOS_INLINE_FUNCTION double	min_var (Args... args)
template<>
KOKKOS_INLINE_FUNCTION double	min_var ()

Variables
static constexpr double	tau_division_proba = 1e-7

Detailed Description

Models definition.

Function Documentation

_get_phi_s_max()

template<FloatingPointType F>

F constexpr Models::_get_phi_s_max ( F density, F dl, F glucose_to_biomass_yield = 0.5 )

staticconstexpr

almost_equal()

KOKKOS_INLINE_FUNCTION bool Models::almost_equal	(	double	val,
		double	val2,
		double	tolerance = 1e-8 )

almost_zero()

KOKKOS_INLINE_FUNCTION constexpr bool Models::almost_zero ( double x, double tol = 1e-8 )

constexpr

c_linear_density()

template<FloatingPointType F>

KOKKOS_INLINE_FUNCTION consteval F Models::c_linear_density ( F rho, F d )

consteval

check_div()

template<FloatingPointType T>

KOKKOS_INLINE_FUNCTION MC::Status Models::check_div	(	const T	l,
		const T	lc )

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check_probability_division()

KOKKOS_INLINE_FUNCTION bool Models::check_probability_division	(	double	d_t,
		double	gamma,
		MC::pool_type	random_pool )

f_saturation()

template<FloatingPointType F>

KOKKOS_INLINE_FUNCTION constexpr F Models::f_saturation ( const F x, const F k )

constexprnoexcept

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g_partition()

template<FloatingPointType T>

KOKKOS_INLINE_FUNCTION Kokkos::pair< T, T > Models::g_partition	(	T	a,
		T	p )

get_clamped_concentration_cast()

template<typename T>

KOKKOS_INLINE_FUNCTION T Models::get_clamped_concentration_cast	(	const MC::LocalConcentration &	c,
		const std::size_t	position_index,
		const std::size_t	species_index )

get_model_configuration() [1/2]

template<typename Model>
requires (std::is_constructible_v<AutoGenerated::ContainerVariant, MC::ParticlesContainer<Model>> && ConfigurableModel<Model>)

Model::Config Models::get_model_configuration	(	const ExecInfo &	info,
		std::size_t	n )

get_model_configuration() [2/2]

template<typename Model>
requires (std::is_constructible_v<AutoGenerated::ContainerVariant, MC::ParticlesContainer<Model>> && NonConfigurableModel<Model>)

Model::Config Models::get_model_configuration	(	const ExecInfo &	info,
		std::size_t	n )

min_var() [1/2]

template<>

KOKKOS_INLINE_FUNCTION double Models::min_var

(

)

min_var() [2/2]

template<typename... Args>

KOKKOS_INLINE_FUNCTION double Models::min_var

(

Args...

args

)

Variable Documentation

tau_division_proba

double Models::tau_division_proba = 1e-7

staticconstexpr