Models::TwoMetaDiv Struct Reference

#include <two_meta_div.hpp>

Classes
struct	TMDConfig
struct	Yields

Public Types
enum class	particle_var : int {   age = INDEX_FROM_ENUM(Uptakeparticle_var::COUNT) , length , nu1 , nu2 ,   l_cp , nu_eff_1 , nu_eff_2 , contrib_phi_s ,   contrib_phi_o2 , contrib_phi_ac , COUNT }
using	uniform_weight = std::true_type
using	Self = TwoMetaDiv
using	FloatType = float
using	SelfParticle = MC::ParticlesModel<Self::n_var, Self::FloatType>
using	Config = TMDConfig

Static Public Member Functions
static KOKKOS_INLINE_FUNCTION void	init (const MC::KPRNG::pool_type &random_pool, std::size_t idx, const SelfParticle &arr, const Config &config)
static KOKKOS_INLINE_FUNCTION MC::Status	update (const MC::KPRNG::pool_type &random_pool, FloatType d_t, std::size_t idx, const SelfParticle &arr, const MC::LocalConcentration &c)
static KOKKOS_INLINE_FUNCTION void	division (const MC::KPRNG::pool_type &random_pool, std::size_t idx, std::size_t idx2, const SelfParticle &arr, const SelfParticle &buffer_arr)
static KOKKOS_INLINE_FUNCTION void	contribution (std::size_t idx, std::size_t position, double weight, const SelfParticle &arr, const MC::ContributionView &contributions)
static KOKKOS_INLINE_FUNCTION double	mass (std::size_t idx, const SelfParticle &arr)
static std::vector< std::string_view >	names ()
static std::vector< std::size_t >	get_number ()
static KOKKOS_INLINE_FUNCTION void	preinit ()

Public Attributes
MODEL_CONSTANT FloatType	l_max_m = 5e-6
MODEL_CONSTANT FloatType	l_c_m = 3e-6
MODEL_CONSTANT FloatType	d_m = 0.6e-6
MODEL_CONSTANT FloatType	l_min_m = 0.9e-6
MODEL_CONSTANT FloatType	lin_density = c_linear_density(static_cast<FloatType>(1000), d_m)
MODEL_CONSTANT FloatType	MolarMassG = Models::MolarMass::GramPerMole::glucose<float>
MODEL_CONSTANT FloatType	MolarMassO2 = Models::MolarMass::GramPerMole::dioxygen<float>
MODEL_CONSTANT FloatType	y_sx_1
MODEL_CONSTANT FloatType	y_sx_2
MODEL_CONSTANT FloatType	y_sa
MODEL_CONSTANT FloatType	y_os_molar = 6
MODEL_CONSTANT FloatType	k_o = 0.0001
MODEL_CONSTANT FloatType	dl_max_ms = 8 * 2e-10
MODEL_CONSTANT FloatType	tau_1 = 1000.
MODEL_CONSTANT FloatType	tau_2 = 1000.
MODEL_CONSTANT FloatType	phi_s_max = (dl_max_ms * lin_density) * y_sx_1
MODEL_CONSTANT FloatType	phi_perm_max = phi_s_max / 40.
MODEL_CONSTANT FloatType	phi_o2_max
MODEL_CONSTANT float	nu_max_kg_s = dl_max_ms * lin_density
MODEL_CONSTANT auto	length_c_dist

Static Public Attributes
static constexpr std::size_t	n_var = INDEX_FROM_ENUM(particle_var::COUNT)
static constexpr std::string_view	name = "two_meta_div"

Member Typedef Documentation

Config

using Models::TwoMetaDiv::Config = TMDConfig

FloatType

using Models::TwoMetaDiv::FloatType = float

Self

using Models::TwoMetaDiv::Self = TwoMetaDiv

SelfParticle

using Models::TwoMetaDiv::SelfParticle = MC::ParticlesModel<Self::n_var, Self::FloatType>

uniform_weight

using Models::TwoMetaDiv::uniform_weight = std::true_type

Member Enumeration Documentation

particle_var

enum class Models::TwoMetaDiv::particle_var : int

strong

Enumerator
age
length
nu1
nu2
l_cp
nu_eff_1
nu_eff_2
contrib_phi_s
contrib_phi_o2
contrib_phi_ac
COUNT

Member Function Documentation

contribution()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaDiv::contribution ( std::size_t idx, std::size_t position, double weight, const SelfParticle & arr, const MC::ContributionView & contributions )

static

division()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaDiv::division ( const MC::KPRNG::pool_type & random_pool, std::size_t idx, std::size_t idx2, const SelfParticle & arr, const SelfParticle & buffer_arr )

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get_number()

static std::vector< std::size_t > Models::TwoMetaDiv::get_number ( )

inlinestatic

init()

KOKKOS_INLINE_FUNCTION void Models::TwoMetaDiv::init ( const MC::KPRNG::pool_type & random_pool, std::size_t idx, const SelfParticle & arr, const Config & config )

static

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mass()

static KOKKOS_INLINE_FUNCTION double Models::TwoMetaDiv::mass ( std::size_t idx, const SelfParticle & arr )

inlinestatic

names()

static std::vector< std::string_view > Models::TwoMetaDiv::names ( )

inlinestatic

preinit()

static KOKKOS_INLINE_FUNCTION void Models::TwoMetaDiv::preinit ( )

inlinestatic

update()

KOKKOS_INLINE_FUNCTION MC::Status Models::TwoMetaDiv::update ( const MC::KPRNG::pool_type & random_pool, FloatType d_t, std::size_t idx, const SelfParticle & arr, const MC::LocalConcentration & c )

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Member Data Documentation

d_m

MODEL_CONSTANT FloatType Models::TwoMetaDiv::d_m = 0.6e-6

dl_max_ms

MODEL_CONSTANT FloatType Models::TwoMetaDiv::dl_max_ms = 8 * 2e-10

k_o

MODEL_CONSTANT FloatType Models::TwoMetaDiv::k_o = 0.0001

l_c_m

MODEL_CONSTANT FloatType Models::TwoMetaDiv::l_c_m = 3e-6

l_max_m

MODEL_CONSTANT FloatType Models::TwoMetaDiv::l_max_m = 5e-6

l_min_m

MODEL_CONSTANT FloatType Models::TwoMetaDiv::l_min_m = 0.9e-6

length_c_dist

MODEL_CONSTANT auto Models::TwoMetaDiv::length_c_dist

Initial value:

=
        MC::Distributions::TruncatedNormal<FloatType>(l_c_m, l_c_m / 7., l_min_m, l_max_m)

lin_density

MODEL_CONSTANT FloatType Models::TwoMetaDiv::lin_density = c_linear_density(static_cast<FloatType>(1000), d_m)

MolarMassG

MODEL_CONSTANT FloatType Models::TwoMetaDiv::MolarMassG = Models::MolarMass::GramPerMole::glucose<float>

MolarMassO2

MODEL_CONSTANT FloatType Models::TwoMetaDiv::MolarMassO2 = Models::MolarMass::GramPerMole::dioxygen<float>

n_var

std::size_t Models::TwoMetaDiv::n_var = INDEX_FROM_ENUM(particle_var::COUNT)

staticconstexpr

name

std::string_view Models::TwoMetaDiv::name = "two_meta_div"

staticconstexpr

nu_max_kg_s

MODEL_CONSTANT float Models::TwoMetaDiv::nu_max_kg_s = dl_max_ms * lin_density

phi_o2_max

MODEL_CONSTANT FloatType Models::TwoMetaDiv::phi_o2_max

Initial value:

=
        10 * phi_s_max / MolarMassG * y_os_molar * MolarMassO2

phi_perm_max

MODEL_CONSTANT FloatType Models::TwoMetaDiv::phi_perm_max = phi_s_max / 40.

phi_s_max

MODEL_CONSTANT FloatType Models::TwoMetaDiv::phi_s_max = (dl_max_ms * lin_density) * y_sx_1

tau_1

MODEL_CONSTANT FloatType Models::TwoMetaDiv::tau_1 = 1000.

tau_2

MODEL_CONSTANT FloatType Models::TwoMetaDiv::tau_2 = 1000.

y_os_molar

MODEL_CONSTANT FloatType Models::TwoMetaDiv::y_os_molar = 6

y_sa

MODEL_CONSTANT FloatType Models::TwoMetaDiv::y_sa

Initial value:

= Yields::Y_AG * Models::MolarMass::GramPerMole::acetate<float> /
                                    MolarMassG

y_sx_1

MODEL_CONSTANT FloatType Models::TwoMetaDiv::y_sx_1

Initial value:

= Models::MolarMass::X / Models::MolarMass::glucose *
                                      (Yields::Y_XG * Yields::Yo_EG) /
                                      (Yields::Y_EG + Yields::Yo_EG)

y_sx_2

MODEL_CONSTANT FloatType Models::TwoMetaDiv::y_sx_2

Initial value:

=
        Yields::Y_XG * Yields::Yf_EG / (Yields::Y_EG + Yields::Yf_EG)

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The documentation for this struct was generated from the following file:

• apps/libs/models/public/models/two_meta_div.hpp