Simulation::ScalarSimulation Class Reference

#include <scalar_simulation.hpp>

Collaboration diagram for Simulation::ScalarSimulation:

Public Member Functions
	ScalarSimulation (size_t n_compartments, size_t n_species, std::span< double > volume)
	ScalarSimulation (ScalarSimulation &&other) noexcept=delete
	ScalarSimulation (const ScalarSimulation &other) noexcept=delete
ScalarSimulation	operator= (const ScalarSimulation &other)=delete
ScalarSimulation	operator= (ScalarSimulation &&other)=delete
	~ScalarSimulation ()=default
bool	deep_copy_concentration (const std::vector< double > &data)
void	reduce_contribs (std::span< const double > data)
void	set_transition (CmaUtils::StateCooMatrixType &&transition)
void	performStepGL (double d_t, const ColMajorMatrixtype< double > &mtr, MassTransfer::Sign sign)
void	performStep (double d_t)
void	synchro_sources ()
ColMajorMatrixtype< double > &	get_concentration ()
ColMajorKokkosScalarMatrix< double >	get_device_concentration () const
std::span< double const >	volume_span () const
std::span< double >	contribution_span () const
std::span< double >	contribution_span_mut ()
const DiagonalType &	getVolume () const
auto	getConcentrationArray () const
kernelContribution	get_kernel_contribution () const
const ColMajorMatrixtype< double > &	get_mass_transfer () const
std::span< double >	getConcentrationData ()
std::size_t	n_row () const noexcept
std::size_t	n_col () const noexcept
void	set_mass ()
void	set_kernel_contribs_to_host () const
void	set_feed (std::uint64_t i_r, std::uint64_t i_c, double val)
void	set_sink (std::uint64_t i_compartment, double val)
void	set_zero_contribs ()
void	setVolumes (std::span< const double > volumes, std::span< const double > inv_volumes)

Private Attributes
std::size_t	n_r
std::size_t	n_c
ColMajorMatrixtype< double >	total_mass
kernelContribution	contribs
FlowMatrixType	m_transition
DiagonalType	volumes_inverse
DiagonalType	m_volumes
DiagonalType	sink
EigenKokkos< double >	concentrations
RowMajorEigenKokkos< double >	sources

Constructor & Destructor Documentation

ScalarSimulation() [1/3]

Simulation::ScalarSimulation::ScalarSimulation	(	size_t	n_compartments,
		size_t	n_species,
		std::span< double >	volume )

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ScalarSimulation() [2/3]

Simulation::ScalarSimulation::ScalarSimulation ( ScalarSimulation && other )

deletenoexcept

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ScalarSimulation() [3/3]

Simulation::ScalarSimulation::ScalarSimulation ( const ScalarSimulation & other )

deletenoexcept

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~ScalarSimulation()

Simulation::ScalarSimulation::~ScalarSimulation ( )

default

Member Function Documentation

contribution_span()

std::span< double > Simulation::ScalarSimulation::contribution_span ( ) const

inlinenodiscard

contribution_span_mut()

std::span< double > Simulation::ScalarSimulation::contribution_span_mut ( )

inlinenodiscard

deep_copy_concentration()

bool Simulation::ScalarSimulation::deep_copy_concentration

(

const std::vector< double > &

data

)

get_concentration()

ColMajorMatrixtype< double > & Simulation::ScalarSimulation::get_concentration ( )

nodiscard

get_device_concentration()

ColMajorKokkosScalarMatrix< double > Simulation::ScalarSimulation::get_device_concentration ( ) const

nodiscard

get_kernel_contribution()

kernelContribution Simulation::ScalarSimulation::get_kernel_contribution ( ) const

inlinenodiscard

get_mass_transfer()

const ColMajorMatrixtype< double > & Simulation::ScalarSimulation::get_mass_transfer ( ) const

nodiscard

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getConcentrationArray()

auto Simulation::ScalarSimulation::getConcentrationArray ( ) const

inlinenodiscard

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getConcentrationData()

std::span< double > Simulation::ScalarSimulation::getConcentrationData ( )

inlinenodiscard

getVolume()

const DiagonalType & Simulation::ScalarSimulation::getVolume ( ) const

inlinenodiscard

n_col()

std::size_t Simulation::ScalarSimulation::n_col ( ) const

nodiscardnoexcept

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n_row()

std::size_t Simulation::ScalarSimulation::n_row ( ) const

nodiscardnoexcept

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operator=() [1/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( const ScalarSimulation & other )

delete

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operator=() [2/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( ScalarSimulation && other )

delete

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performStep()

void Simulation::ScalarSimulation::performStep

(

double

d_t

)

performStepGL()

void Simulation::ScalarSimulation::performStepGL	(	double	d_t,
		const ColMajorMatrixtype< double > &	mtr,
		MassTransfer::Sign	sign )

reduce_contribs()

void Simulation::ScalarSimulation::reduce_contribs

(

std::span< const double >

data

)

set_feed()

void Simulation::ScalarSimulation::set_feed ( std::uint64_t i_r, std::uint64_t i_c, double val )

inline

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set_kernel_contribs_to_host()

void Simulation::ScalarSimulation::set_kernel_contribs_to_host ( ) const

inline

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set_mass()

void Simulation::ScalarSimulation::set_mass

(

)

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set_sink()

void Simulation::ScalarSimulation::set_sink ( std::uint64_t i_compartment, double val )

inline

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set_transition()

void Simulation::ScalarSimulation::set_transition

(

CmaUtils::StateCooMatrixType &&

transition

)

set_zero_contribs()

void Simulation::ScalarSimulation::set_zero_contribs ( )

inline

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setVolumes()

void Simulation::ScalarSimulation::setVolumes ( std::span< const double > volumes, std::span< const double > inv_volumes )

inline

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synchro_sources()

void Simulation::ScalarSimulation::synchro_sources

(

)

volume_span()

std::span< double const > Simulation::ScalarSimulation::volume_span ( ) const

inlinenodiscard

Member Data Documentation

concentrations

EigenKokkos<double> Simulation::ScalarSimulation::concentrations

private

contribs

kernelContribution Simulation::ScalarSimulation::contribs

private

m_transition

FlowMatrixType Simulation::ScalarSimulation::m_transition

private

m_volumes

DiagonalType Simulation::ScalarSimulation::m_volumes

private

n_c

std::size_t Simulation::ScalarSimulation::n_c

private

n_r

std::size_t Simulation::ScalarSimulation::n_r

private

sink

DiagonalType Simulation::ScalarSimulation::sink

private

sources

RowMajorEigenKokkos<double> Simulation::ScalarSimulation::sources

private

total_mass

ColMajorMatrixtype<double> Simulation::ScalarSimulation::total_mass

private

volumes_inverse

DiagonalType Simulation::ScalarSimulation::volumes_inverse

private

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The documentation for this class was generated from the following files:

• apps/libs/simulation/includes/scalar_simulation.hpp
• apps/libs/simulation/src/implScalar.cpp