Simulation::ScalarSimulation Class Reference

#include <scalar_simulation.hpp>

Collaboration diagram for Simulation::ScalarSimulation:

Public Member Functions
	ScalarSimulation (size_t n_compartments, size_t n_species, std::span< double > volume)
	ScalarSimulation (ScalarSimulation &&other) noexcept=delete
	ScalarSimulation (const ScalarSimulation &other) noexcept=delete
ScalarSimulation	operator= (const ScalarSimulation &other)=delete
ScalarSimulation	operator= (ScalarSimulation &&other)=delete
	~ScalarSimulation ()=default
bool	deep_copy_concentration (const std::vector< double > &data)
void	reduce_contribs (std::span< const double > data)
void	performStepGL (double d_t, const FlowMatrixType &m_transition, const ColMajorMatrixtype &mtr, MassTransfer::Sign sign)
void	performStep (double d_t, const FlowMatrixType &m_transition)
ColMajorMatrixtype &	get_concentration ()
ColMajorKokkosScalarMatrix	get_device_concentration () const
std::span< double const >	getVolumeData () const
std::span< double >	getContributionData () const
const DiagonalType &	getVolume () const
auto	getConcentrationArray () const
kernelContribution	get_kernel_contribution () const
const ColMajorMatrixtype &	get_mass_transfer () const
std::span< double >	getConcentrationData ()
std::size_t	n_row () const
std::size_t	n_col () const
void	set_mass ()
void	set_kernel_contribs_to_host () const
void	set_feed (std::uint64_t i_r, std::uint64_t i_c, double val)
void	set_sink (std::uint64_t i_compartment, double val)
void	set_zero_contribs ()
void	setVolumes (std::span< const double > volumes, std::span< const double > inv_volumes)

Private Attributes
std::size_t	n_r
std::size_t	n_c
ColMajorMatrixtype	total_mass
DiagonalType	volumes_inverse
DiagonalType	m_volumes
DiagonalType	sink
EigenKokkos	concentrations
RowMajorEigenKokkos	sources

Constructor & Destructor Documentation

ScalarSimulation() [1/3]

Simulation::ScalarSimulation::ScalarSimulation	(	size_t	n_compartments,
		size_t	n_species,
		std::span< double >	volume )

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ScalarSimulation() [2/3]

Simulation::ScalarSimulation::ScalarSimulation ( ScalarSimulation && other )

deletenoexcept

ScalarSimulation() [3/3]

Simulation::ScalarSimulation::ScalarSimulation ( const ScalarSimulation & other )

deletenoexcept

~ScalarSimulation()

Simulation::ScalarSimulation::~ScalarSimulation ( )

default

Member Function Documentation

deep_copy_concentration()

bool Simulation::ScalarSimulation::deep_copy_concentration

(

const std::vector< double > &

data

)

get_concentration()

ColMajorMatrixtype & Simulation::ScalarSimulation::get_concentration ( )

nodiscard

get_device_concentration()

ColMajorKokkosScalarMatrix Simulation::ScalarSimulation::get_device_concentration ( ) const

nodiscard

get_kernel_contribution()

kernelContribution Simulation::ScalarSimulation::get_kernel_contribution ( ) const

inlinenodiscard

get_mass_transfer()

const ColMajorMatrixtype & Simulation::ScalarSimulation::get_mass_transfer ( ) const

nodiscard

getConcentrationArray()

auto Simulation::ScalarSimulation::getConcentrationArray ( ) const

inlinenodiscard

getConcentrationData()

std::span< double > Simulation::ScalarSimulation::getConcentrationData ( )

inlinenodiscard

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getContributionData()

std::span< double > Simulation::ScalarSimulation::getContributionData ( ) const

inlinenodiscard

getVolume()

const DiagonalType & Simulation::ScalarSimulation::getVolume ( ) const

inlinenodiscard

getVolumeData()

std::span< double const > Simulation::ScalarSimulation::getVolumeData ( ) const

inlinenodiscard

n_col()

std::size_t Simulation::ScalarSimulation::n_col ( ) const

nodiscard

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n_row()

std::size_t Simulation::ScalarSimulation::n_row ( ) const

nodiscard

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operator=() [1/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( const ScalarSimulation & other )

delete

operator=() [2/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( ScalarSimulation && other )

delete

performStep()

void Simulation::ScalarSimulation::performStep	(	double	d_t,
		const FlowMatrixType &	m_transition )

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performStepGL()

void Simulation::ScalarSimulation::performStepGL	(	double	d_t,
		const FlowMatrixType &	m_transition,
		const ColMajorMatrixtype &	mtr,
		MassTransfer::Sign	sign )

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reduce_contribs()

void Simulation::ScalarSimulation::reduce_contribs

(

std::span< const double >

data

)

set_feed()

void Simulation::ScalarSimulation::set_feed ( std::uint64_t i_r, std::uint64_t i_c, double val )

inline

set_kernel_contribs_to_host()

void Simulation::ScalarSimulation::set_kernel_contribs_to_host ( ) const

inline

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set_mass()

void Simulation::ScalarSimulation::set_mass

(

)

set_sink()

void Simulation::ScalarSimulation::set_sink ( std::uint64_t i_compartment, double val )

inline

set_zero_contribs()

void Simulation::ScalarSimulation::set_zero_contribs ( )

inline

setVolumes()

void Simulation::ScalarSimulation::setVolumes ( std::span< const double > volumes, std::span< const double > inv_volumes )

inline

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Member Data Documentation

concentrations

EigenKokkos Simulation::ScalarSimulation::concentrations

private

m_volumes

DiagonalType Simulation::ScalarSimulation::m_volumes

private

n_c

std::size_t Simulation::ScalarSimulation::n_c

private

n_r

std::size_t Simulation::ScalarSimulation::n_r

private

sink

DiagonalType Simulation::ScalarSimulation::sink

private

sources

RowMajorEigenKokkos Simulation::ScalarSimulation::sources

private

total_mass

ColMajorMatrixtype Simulation::ScalarSimulation::total_mass

private

volumes_inverse

DiagonalType Simulation::ScalarSimulation::volumes_inverse

private

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The documentation for this class was generated from the following files:

• apps/libs/simulation/includes/scalar_simulation.hpp
• apps/libs/simulation/src/implScalar.cpp