Simulation::ScalarSimulation Class Reference

#include <scalar_simulation.hpp>

Collaboration diagram for Simulation::ScalarSimulation:

Public Types
using	concentration_view_t = concentration_t::host_view_type
using	concentration_float_type = concentration_view_t::value_type

Public Member Functions
	ScalarSimulation (size_t n_compartments, size_t n_species, std::span< mass_balance_float_type > volume)
	ScalarSimulation (ScalarSimulation &&other) noexcept=delete
	ScalarSimulation (const ScalarSimulation &other) noexcept=delete
ScalarSimulation	operator= (const ScalarSimulation &other)=delete
ScalarSimulation	operator= (ScalarSimulation &&other)=delete
	~ScalarSimulation ()=default
bool	deep_copy_concentration (const std::vector< concentration_float_type > &data)
void	set_transition (CmaUtils::StateCooMatrixType &&transition)
void	performStepGL (double d_t, const KokkosEigen::Alias::ColMajorMatrixtype< mass_balance_float_type > &mtr, MassTransfer::Sign sign)
void	performStep (double d_t)
void	synchro_sources ()
std::size_t	n_row () const noexcept
std::size_t	n_col () const noexcept
concentration_view_t	get_concentration () noexcept
MC::KernelConcentrationType	get_device_concentration () const
std::span< concentration_float_type >	getConcentrationData ()
std::span< const concentration_float_type >	getConcentrationData () const
auto	getConcentrationArray () const
const KokkosEigen::Alias::DiagonalType< mass_balance_float_type > &	getVolume () const noexcept
std::span< double const >	volume_span () const
double	volume_at (std::size_t) const
std::span< const double >	contribution_span () const
std::span< double >	contribution_span_mut ()
MC::kernelContribution	get_kernel_contribution () const
void	set_mass ()
void	set_feed (std::uint64_t i_r, std::uint64_t i_c, double val)
void	set_sink (std::uint64_t i_compartment, double val)
void	set_zero_contribs ()
void	setVolumes (std::span< const double > volumes, std::span< const double > inv_volumes)
void	clearNegs ()

Private Types
using	concentration_t

Private Attributes
std::size_t	n_r
std::size_t	n_c
KokkosEigen::Alias::ColMajorMatrixtype< mass_balance_float_type >	total_mass
KokkosEigen::KokkosEigen2D< mass_balance_float_type, Kokkos::LayoutLeft, Kokkos::DefaultExecutionSpace >	concentrations
KokkosEigen::KokkosEigen2D< mass_balance_float_type, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace >	sources
MC::kernelContribution	contribs
FlowMatrixType< mass_balance_float_type >	m_transition
KokkosEigen::Alias::DiagonalType< mass_balance_float_type >	m_volumes
KokkosEigen::Alias::DiagonalType< mass_balance_float_type >	volumes_inverse
KokkosEigen::Alias::DiagonalType< mass_balance_float_type >	sink

Member Typedef Documentation

concentration_float_type

using Simulation::ScalarSimulation::concentration_float_type = concentration_view_t::value_type

concentration_t

using Simulation::ScalarSimulation::concentration_t

private

Initial value:

 KokkosEigen::KokkosEigen2D<double,
                                     Kokkos::LayoutLeft,
                                     Kokkos::DefaultExecutionSpace>

concentration_view_t

using Simulation::ScalarSimulation::concentration_view_t = concentration_t::host_view_type

Constructor & Destructor Documentation

ScalarSimulation() [1/3]

Simulation::ScalarSimulation::ScalarSimulation	(	size_t	n_compartments,
		size_t	n_species,
		std::span< mass_balance_float_type >	volume )

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ScalarSimulation() [2/3]

Simulation::ScalarSimulation::ScalarSimulation ( ScalarSimulation && other )

deletenoexcept

ScalarSimulation() [3/3]

Simulation::ScalarSimulation::ScalarSimulation ( const ScalarSimulation & other )

deletenoexcept

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~ScalarSimulation()

Simulation::ScalarSimulation::~ScalarSimulation ( )

default

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Member Function Documentation

clearNegs()

void Simulation::ScalarSimulation::clearNegs

(

)

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contribution_span()

std::span< const double > Simulation::ScalarSimulation::contribution_span ( ) const

inlinenodiscard

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contribution_span_mut()

std::span< double > Simulation::ScalarSimulation::contribution_span_mut ( )

inlinenodiscard

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deep_copy_concentration()

bool Simulation::ScalarSimulation::deep_copy_concentration

(

const std::vector< concentration_float_type > &

data

)

get_concentration()

ScalarSimulation::concentration_view_t Simulation::ScalarSimulation::get_concentration ( )

nodiscardnoexcept

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get_device_concentration()

MC::KernelConcentrationType Simulation::ScalarSimulation::get_device_concentration ( ) const

nodiscard

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get_kernel_contribution()

MC::kernelContribution Simulation::ScalarSimulation::get_kernel_contribution ( ) const

inlinenodiscard

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getConcentrationArray()

auto Simulation::ScalarSimulation::getConcentrationArray ( ) const

inlinenodiscard

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getConcentrationData() [1/2]

std::span< double > Simulation::ScalarSimulation::getConcentrationData ( )

inlinenodiscard

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getConcentrationData() [2/2]

std::span< const double > Simulation::ScalarSimulation::getConcentrationData ( ) const

inlinenodiscard

getVolume()

const KokkosEigen::Alias::DiagonalType< mass_balance_float_type > & Simulation::ScalarSimulation::getVolume ( ) const

inlinenodiscardnoexcept

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n_col()

std::size_t Simulation::ScalarSimulation::n_col ( ) const

nodiscardnoexcept

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n_row()

std::size_t Simulation::ScalarSimulation::n_row ( ) const

nodiscardnoexcept

operator=() [1/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( const ScalarSimulation & other )

delete

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operator=() [2/2]

ScalarSimulation Simulation::ScalarSimulation::operator= ( ScalarSimulation && other )

delete

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performStep()

void Simulation::ScalarSimulation::performStep

(

double

d_t

)

performStepGL()

void Simulation::ScalarSimulation::performStepGL	(	double	d_t,
		const KokkosEigen::Alias::ColMajorMatrixtype< mass_balance_float_type > &	mtr,
		MassTransfer::Sign	sign )

set_feed()

void Simulation::ScalarSimulation::set_feed ( std::uint64_t i_r, std::uint64_t i_c, double val )

inline

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set_mass()

void Simulation::ScalarSimulation::set_mass

(

)

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set_sink()

void Simulation::ScalarSimulation::set_sink ( std::uint64_t i_compartment, double val )

inline

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set_transition()

void Simulation::ScalarSimulation::set_transition

(

CmaUtils::StateCooMatrixType &&

transition

)

set_zero_contribs()

void Simulation::ScalarSimulation::set_zero_contribs ( )

inline

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setVolumes()

void Simulation::ScalarSimulation::setVolumes ( std::span< const double > volumes, std::span< const double > inv_volumes )

inline

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synchro_sources()

void Simulation::ScalarSimulation::synchro_sources

(

)

volume_at()

double Simulation::ScalarSimulation::volume_at ( std::size_t index ) const

inline

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volume_span()

std::span< double const > Simulation::ScalarSimulation::volume_span ( ) const

inlinenodiscard

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Member Data Documentation

concentrations

KokkosEigen::KokkosEigen2D<mass_balance_float_type, Kokkos::LayoutLeft, Kokkos::DefaultExecutionSpace> Simulation::ScalarSimulation::concentrations

private

contribs

MC::kernelContribution Simulation::ScalarSimulation::contribs

private

m_transition

FlowMatrixType<mass_balance_float_type> Simulation::ScalarSimulation::m_transition

private

m_volumes

KokkosEigen::Alias::DiagonalType<mass_balance_float_type> Simulation::ScalarSimulation::m_volumes

private

n_c

std::size_t Simulation::ScalarSimulation::n_c

private

n_r

std::size_t Simulation::ScalarSimulation::n_r

private

sink

KokkosEigen::Alias::DiagonalType<mass_balance_float_type> Simulation::ScalarSimulation::sink

private

sources

KokkosEigen::KokkosEigen2D<mass_balance_float_type, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> Simulation::ScalarSimulation::sources

private

total_mass

KokkosEigen::Alias::ColMajorMatrixtype<mass_balance_float_type> Simulation::ScalarSimulation::total_mass

private

volumes_inverse

KokkosEigen::Alias::DiagonalType<mass_balance_float_type> Simulation::ScalarSimulation::volumes_inverse

private

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The documentation for this class was generated from the following files:

• apps/libs/simulation/includes/scalar_simulation.hpp
• apps/libs/simulation/src/implScalar.cpp