BioCMAMC-ST
main_exporter.hpp
1#ifndef __CORE_MAIN_EXPORTER_HPP__
2#define __CORE_MAIN_EXPORTER_HPP__
3
4#include "simulation/simulation.hpp"
5#include <common/execinfo.hpp>
6#include <core/simulation_parameters.hpp>
7#include <cstddef>
8#include <cstdint>
9#include <dataexporter/data_exporter.hpp>
10#include <optional>
11#include <span>
12#include <string>
13#include <string_view>
14#include <vector>
15namespace Core
16{
26 {
27 public:
31 MainExporter() = default;
32
40 MainExporter(const ExecInfo& info,
41 std::string_view _filename,
42 std::optional<export_metadata_t> user_description = std::nullopt);
43
51 void write_initial(double weight,
52 const Core::SimulationParameters& params);
53
60 void write_final(Simulation::SimulationUnit& simulation,std::size_t number_particles);
61
70 void init_fields(uint64_t n_iter,
71 uint64_t n_compartments,
72 uint64_t n_species,
73 bool is_two_phase_flow);
74
84 void update_fields(double t,
85 std::span<double> concentration_liquid,
86 std::span<const double> liquid_volume,
87 std::optional<std::span<const double>> concentration_gas,
88 std::optional<std::span<const double>> volume_gas,
89 std::optional<std::span<const double>> mtr);
90
91 private:
92 static const std::string
94 uint64_t n_expected_export{};
95 };
96
97} // namespace Core
98
99#endif
A class responsible for exporting various types of data such as matrices, arrays, and metadata in a s...
Definition data_exporter.hpp:42
Exporter for host-only data related to general-purpose simulation data (e.g., concentration,...
Definition main_exporter.hpp:26
static const std::string base_group_name
Definition main_exporter.hpp:93
void update_fields(double t, std::span< double > concentration_liquid, std::span< const double > liquid_volume, std::optional< std::span< const double > > concentration_gas, std::optional< std::span< const double > > volume_gas, std::optional< std::span< const double > > mtr)
Updates fields with the current simulation state.
Definition main_exporter.cpp:107
void init_fields(uint64_t n_iter, uint64_t n_compartments, uint64_t n_species, bool is_two_phase_flow)
Initializes fields required for simulation export.
Definition main_exporter.cpp:45
MainExporter()=default
Default constructor for MainExporter.
void write_initial(double weight, const Core::SimulationParameters &params)
Writes initial simulation data to the output.
Definition main_exporter.cpp:28
void write_final(Simulation::SimulationUnit &simulation, std::size_t number_particles)
Writes final simulation data to the output.
Definition main_exporter.cpp:137
uint64_t n_expected_export
Definition main_exporter.hpp:94
Definition simulation.hpp:65
Core component to perform simulation.
Definition data_exporter.hpp:18
Definition simulation_parameters.hpp:53
Definition execinfo.hpp:12