BioCMAMC-ST
main_exporter.hpp
1#ifndef __CORE_MAIN_EXPORTER_HPP__
2#define __CORE_MAIN_EXPORTER_HPP__
3
4#include "mc/events.hpp"
5
6#include <common/execinfo.hpp>
7#include <core/simulation_parameters.hpp>
8#include <cstddef>
9#include <cstdint>
10#include <dataexporter/data_exporter.hpp>
11#include <optional>
12#include <span>
13#include <string>
14#include <string_view>
15#include <vector>
16
17namespace Simulation
18{
19 class SimulationUnit;
20
21}
22
23namespace Core
24{
34 class MainExporter final : public DataExporter
35 {
36 public:
40 MainExporter() = default;
41
49 MainExporter(const ExecInfo& info,
50 std::string_view _filename,
51 std::optional<export_metadata_t> user_description
52 = std::nullopt);
53
62 void write_initial(double weight, const Core::SimulationParameters& params);
63
72 void write_final(const Simulation::SimulationUnit* simulation,
73 std::size_t number_particles);
74
84 void init_fields(uint64_t n_iter,
85 uint64_t n_compartments,
86 uint64_t n_species,
87 bool is_two_phase_flow);
88
100 void update_fields(double t,
101 std::span<double> concentration_liquid,
102 std::span<const double> liquid_volume,
103 std::optional<std::span<const double>> concentration_gas,
104 std::optional<std::span<const double>> volume_gas,
105 std::optional<std::span<const double>> mtr);
106
107 private:
108 static const std::string
110 uint64_t n_expected_export{};
112 };
113
114} // namespace Core
115
116#endif
DataExporter(const DataExporter &)=delete
static const std::string base_group_name
Definition main_exporter.hpp:109
void update_fields(double t, std::span< double > concentration_liquid, std::span< const double > liquid_volume, std::optional< std::span< const double > > concentration_gas, std::optional< std::span< const double > > volume_gas, std::optional< std::span< const double > > mtr)
Updates fields with the current simulation state.
Definition main_exporter.cpp:113
void init_fields(uint64_t n_iter, uint64_t n_compartments, uint64_t n_species, bool is_two_phase_flow)
Initializes fields required for simulation export.
Definition main_exporter.cpp:49
MainExporter()=default
Default constructor for MainExporter.
void write_initial(double weight, const Core::SimulationParameters &params)
Writes initial simulation data to the output.
Definition main_exporter.cpp:29
void write_final(const Simulation::SimulationUnit *simulation, std::size_t number_particles)
Writes final simulation data to the output.
Definition main_exporter.cpp:148
uint64_t n_expected_export
Definition main_exporter.hpp:110
Definition simulation.hpp:56
Core component to perform simulation.
Definition data_exporter.hpp:19
Namespace that contains classes and structures related to simulation handling.
Definition main_exporter.hpp:18
Definition simulation_parameters.hpp:58
Definition execinfo.hpp:12