BioCMAMC-ST
domain.hpp
1#ifndef __MC_REACTORDOMAIN_HPP__
2#define __MC_REACTORDOMAIN_HPP__
3
4#include <Kokkos_Core.hpp>
5#include <cassert>
6#include <common/common.hpp>
7#include <cstddef>
8#include <cstdint>
9#include <mc/alias.hpp>
10#include <mc/traits.hpp>
11#include <span>
12
13namespace MC
14{
15
18 {
19 using float_type = double;
20 std::size_t index;
23 };
24
36
56 {
57 public:
58 using n_cells_view_type = Kokkos::View<uint64_t*, ComputeSpace>;
59 ReactorDomain(const ReactorDomain&) = delete;
61
66
70 ReactorDomain(ReactorDomain&& other) noexcept = default;
71
75 explicit ReactorDomain(std::span<double> volumes);
76
77 ReactorDomain(double total_volume, std::size_t size);
78
82 ~ReactorDomain() = default;
83
87 ReactorDomain& operator=(ReactorDomain&& other) noexcept;
88
89 void update(std::span<const double> newliquid_volume,
90 std::span<const std::size_t> neighors_flat,
91 std::span<const double> out_flows,
92 std::span<const double> proba_flat);
93
94 void set_leaving_flow(std::size_t i,
95 std::size_t i_flow,
96 double flow,
97 double volume) const;
98
99 void init_inner(std::size_t n_flows);
100
102
106 [[nodiscard]] size_t getNumberCompartments() const noexcept;
107
111 [[nodiscard]] double getTotalVolume() const noexcept;
112
116 template <class Archive>
117 void
118 save(Archive& ar) const
119 {
120
121 ar(id, size, _total_volume);
122 }
123
124 template <class Archive>
125 void
126 load(Archive& ar)
127 {
128 ar(id, size, _total_volume);
129 }
130
131 private:
132 double _total_volume = 0.;
133 size_t id = 0;
134 size_t size = 0;
136
140 void setVolumes(std::span<double const> volumes_liq);
141
145 void setLiquidNeighbors(std::size_t e1,
146 std::size_t e2,
147 std::span<const size_t> flat_data);
148 };
149
150 // inline NeighborsView<ComputeSpace, true> ReactorDomain::getNeighbors() const
151 // {
152 // return this->inner.neighbors;
153 // }
154
155 inline size_t
157 {
158 return size;
159 }
160
161 inline double
163 {
164 return this->_total_volume;
165 }
166
167 [[nodiscard]] inline DomainState<ComputeSpace, true>
169 {
170
171 return { inner.neighbors,
172 inner.diag_transition,
173 inner.cumulative_probability,
174 inner.leaving_flow,
175 inner.liquid_volume };
176 }
177
178} // namespace MC
179
180#endif //__MC_REACTORDOMAIN_HPP__
void update(std::span< const double > newliquid_volume, std::span< const std::size_t > neighors_flat, std::span< const double > out_flows, std::span< const double > proba_flat)
Definition domain.cpp:44
double _total_volume
Domain total volume.
Definition domain.hpp:132
DomainState< ComputeSpace, true > get_const_inner()
Definition domain.hpp:168
ReactorDomain & operator=(const ReactorDomain &)=delete
~ReactorDomain()=default
Default destructor.
Kokkos::View< uint64_t *, ComputeSpace > n_cells_view_type
Definition domain.hpp:58
void load(Archive &ar)
Definition domain.hpp:126
double getTotalVolume() const noexcept
Return total volume of domain.
Definition domain.hpp:162
ReactorDomain()
Default constructor.
Definition domain.cpp:31
void setLiquidNeighbors(std::size_t e1, std::size_t e2, std::span< const size_t > flat_data)
Update neigbors of compartments.
Definition domain.cpp:77
void init_inner(std::size_t n_flows)
Definition domain.cpp:123
size_t size
Number of compartment.
Definition domain.hpp:134
void save(Archive &ar) const
Return a const reference to neighbors.
Definition domain.hpp:118
void setVolumes(std::span< double const > volumes_liq)
Set volume of liquid and gas of each compartment.
Definition domain.cpp:14
void set_leaving_flow(std::size_t i, std::size_t i_flow, double flow, double volume) const
Definition domain.cpp:97
ReactorDomain(const ReactorDomain &)=delete
DomainState< ComputeSpace, false > inner
Definition domain.hpp:135
size_t getNumberCompartments() const noexcept
Return the number of compartment in the domain.
Definition domain.hpp:156
ReactorDomain(ReactorDomain &&other) noexcept=default
Move constructor.
Namespace that contains classes and structures related to Monte Carlo (MC) simulations.
Definition alias.hpp:16
std::conditional_t< is_const, Kokkos::View< const std::size_t **, Kokkos::LayoutRight, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< std::size_t **, Kokkos::LayoutRight, ExecSpace > > NeighborsView
Definition alias.hpp:206
std::conditional_t< is_const, Kokkos::View< const double *, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double *, ExecSpace > > VolumeView
Definition alias.hpp:173
std::conditional_t< is_const, Kokkos::View< const LeavingFlow *, Kokkos::SharedHostPinnedSpace >, Kokkos::View< LeavingFlow *, Kokkos::SharedHostPinnedSpace > > LeavingFlowView
Definition alias.hpp:190
std::conditional_t< is_const, Kokkos::View< const double **, Kokkos::LayoutRight, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double **, Kokkos::LayoutRight, ExecSpace > > CumulativeProbabilityView
Definition alias.hpp:197
std::conditional_t< is_const, Kokkos::View< const double *, Kokkos::LayoutLeft, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double *, Kokkos::LayoutLeft, ExecSpace > > DiagonalView
Definition alias.hpp:181
Structure to store information about domain needed during MC cycle data is likely to change between e...
Definition domain.hpp:29
VolumeView< ExecSpace, is_const > liquid_volume
Definition domain.hpp:34
MC::NeighborsView< ExecSpace, is_const > neighbors
Definition domain.hpp:30
DiagonalView< ExecSpace, is_const > diag_transition
Definition domain.hpp:31
LeavingFlowView< is_const > leaving_flow
Definition domain.hpp:33
CumulativeProbabilityView< ExecSpace, is_const > cumulative_probability
Definition domain.hpp:32
Store position and value of volumic flow at outlet.
Definition domain.hpp:18
std::size_t index
Definition domain.hpp:20
float_type flow
Definition domain.hpp:21
float_type volume
Definition domain.hpp:22
double float_type
Definition domain.hpp:19