BioCMAMC-ST
domain.hpp
1#ifndef __MC_REACTORDOMAIN_HPP__
2#define __MC_REACTORDOMAIN_HPP__
3
4#include <Kokkos_Core.hpp>
5#include <cassert>
6#include <common/common.hpp>
7#include <cstddef>
8#include <cstdint>
9#include <mc/alias.hpp>
10#include <mc/traits.hpp>
11#include <span>
12
13namespace MC
14{
15
18 {
19 std::size_t index;
20 double flow;
21 };
22
34
54 {
55 public:
56 using n_cells_view_type = Kokkos::View<uint64_t*, ComputeSpace>;
57 ReactorDomain(const ReactorDomain&) = delete;
59
64
68 ReactorDomain(ReactorDomain&& other) noexcept = default;
69
73 explicit ReactorDomain(std::span<double> volumes);
74
75 ReactorDomain(double total_volume, std::size_t size);
76
80 ~ReactorDomain() = default;
81
85 ReactorDomain& operator=(ReactorDomain&& other) noexcept;
86
87 void update(std::span<const double> newliquid_volume,
88 std::span<const std::size_t> neighors_flat,
89 std::span<const double> out_flows,
90 std::span<const double> proba_flat);
91
92 void set_leaving_flow(std::size_t i, std::size_t i_flow, double flow) const;
93
94 void init_inner(std::size_t n_flows);
95
97
101 [[nodiscard]] size_t getNumberCompartments() const noexcept;
102
106 [[nodiscard]] double getTotalVolume() const noexcept;
107
111 template <class Archive>
112 void
113 save(Archive& ar) const
114 {
115
116 ar(id, size, _total_volume);
117 }
118
119 template <class Archive>
120 void
121 load(Archive& ar)
122 {
123 ar(id, size, _total_volume);
124 }
125
126 private:
127 double _total_volume = 0.;
128 size_t id = 0;
129 size_t size = 0;
131
135 void setVolumes(std::span<double const> volumes_liq);
136
140 void setLiquidNeighbors(std::size_t e1,
141 std::size_t e2,
142 std::span<const size_t> flat_data);
143 };
144
145 // inline NeighborsView<ComputeSpace, true> ReactorDomain::getNeighbors() const
146 // {
147 // return this->inner.neighbors;
148 // }
149
150 inline size_t
152 {
153 return size;
154 }
155
156 inline double
158 {
159 return this->_total_volume;
160 }
161
162 [[nodiscard]] inline DomainState<ComputeSpace, true>
164 {
165 return { inner.neighbors,
166 inner.diag_transition,
167 inner.cumulative_probability,
168 inner.leaving_flow,
169 inner.liquid_volume };
170 }
171
172} // namespace MC
173
174#endif //__MC_REACTORDOMAIN_HPP__
void update(std::span< const double > newliquid_volume, std::span< const std::size_t > neighors_flat, std::span< const double > out_flows, std::span< const double > proba_flat)
Definition domain.cpp:44
double _total_volume
Domain total volume.
Definition domain.hpp:127
DomainState< ComputeSpace, true > get_const_inner()
Definition domain.hpp:163
void set_leaving_flow(std::size_t i, std::size_t i_flow, double flow) const
Definition domain.cpp:97
ReactorDomain & operator=(const ReactorDomain &)=delete
~ReactorDomain()=default
Default destructor.
Kokkos::View< uint64_t *, ComputeSpace > n_cells_view_type
Definition domain.hpp:56
void load(Archive &ar)
Definition domain.hpp:121
double getTotalVolume() const noexcept
Return total volume of domain.
Definition domain.hpp:157
ReactorDomain()
Default constructor.
Definition domain.cpp:31
void setLiquidNeighbors(std::size_t e1, std::size_t e2, std::span< const size_t > flat_data)
Update neigbors of compartments.
Definition domain.cpp:77
void init_inner(std::size_t n_flows)
Definition domain.cpp:117
size_t size
Number of compartment.
Definition domain.hpp:129
void save(Archive &ar) const
Return a const reference to neighbors.
Definition domain.hpp:113
void setVolumes(std::span< double const > volumes_liq)
Set volume of liquid and gas of each compartment.
Definition domain.cpp:14
ReactorDomain(const ReactorDomain &)=delete
DomainState< ComputeSpace, false > inner
Definition domain.hpp:130
size_t getNumberCompartments() const noexcept
Return the number of compartment in the domain.
Definition domain.hpp:151
ReactorDomain(ReactorDomain &&other) noexcept=default
Move constructor.
Namespace that contains classes and structures related to Monte Carlo (MC) simulations.
Definition alias.hpp:15
std::conditional_t< is_const, Kokkos::View< const std::size_t **, Kokkos::LayoutRight, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< std::size_t **, Kokkos::LayoutRight, ExecSpace > > NeighborsView
Definition alias.hpp:130
std::conditional_t< is_const, Kokkos::View< const double *, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double *, ExecSpace > > VolumeView
Definition alias.hpp:98
std::conditional_t< is_const, Kokkos::View< const LeavingFlow *, Kokkos::SharedHostPinnedSpace >, Kokkos::View< LeavingFlow *, Kokkos::SharedHostPinnedSpace > > LeavingFlowView
Definition alias.hpp:115
std::conditional_t< is_const, Kokkos::View< const double **, Kokkos::LayoutRight, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double **, Kokkos::LayoutRight, ExecSpace > > CumulativeProbabilityView
Definition alias.hpp:121
std::conditional_t< is_const, Kokkos::View< const double *, Kokkos::LayoutLeft, ExecSpace, Kokkos::MemoryTraits< Kokkos::RandomAccess > >, Kokkos::View< double *, Kokkos::LayoutLeft, ExecSpace > > DiagonalView
Definition alias.hpp:106
Structure to store information about domain needed during MC cycle data is likely to change between e...
Definition domain.hpp:27
VolumeView< ExecSpace, is_const > liquid_volume
Definition domain.hpp:32
MC::NeighborsView< ExecSpace, is_const > neighbors
Definition domain.hpp:28
DiagonalView< ExecSpace, is_const > diag_transition
Definition domain.hpp:29
LeavingFlowView< is_const > leaving_flow
Definition domain.hpp:31
CumulativeProbabilityView< ExecSpace, is_const > cumulative_probability
Definition domain.hpp:30
Store position and value of volumic flow at outlet.
Definition domain.hpp:18
std::size_t index
Definition domain.hpp:19
double flow
Definition domain.hpp:20